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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="research-article" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Russian Journal of Genetics</journal-id><journal-title-group><journal-title xml:lang="en">Russian Journal of Genetics</journal-title><trans-title-group xml:lang="ru"><trans-title>Генетика</trans-title></trans-title-group></journal-title-group><issn publication-format="print">0016-6758</issn><issn publication-format="electronic">3034-5103</issn><publisher><publisher-name xml:lang="en">The Russian Academy of Sciences</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">666953</article-id><article-id pub-id-type="doi">10.31857/S0016675824040087</article-id><article-id pub-id-type="edn">crcouh</article-id><article-categories><subj-group subj-group-type="toc-heading"><subject>ГЕНЕТИКА ЧЕЛОВЕКА</subject></subj-group><subj-group subj-group-type="article-type"><subject>Research Article</subject></subj-group></article-categories><title-group><article-title xml:lang="en">Analysis of the involvement of susceptibility genes to to coronary heart disease in implementation signaling and metabolic pathways</article-title><trans-title-group xml:lang="ru"><trans-title>Анализ вовлеченности генов предрасположенности к ишемической болезни сердца в реализацию сигнальных и метаболических путей</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Chasovskikh</surname><given-names>N. Yu.</given-names></name><name xml:lang="ru"><surname>Часовских</surname><given-names>Н. Ю.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>evgenika06@gmail.com</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Shestakova</surname><given-names>E. E.</given-names></name><name xml:lang="ru"><surname>Шестакова</surname><given-names>Е. Е.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>evgenika06@gmail.com</email><xref ref-type="aff" rid="aff1"/></contrib></contrib-group><aff-alternatives id="aff1"><aff><institution xml:lang="en">Siberian State Medical University</institution></aff><aff><institution xml:lang="ru">Сибирский государственный медицинский университет</institution></aff></aff-alternatives><pub-date date-type="pub" iso-8601-date="2024-04-11" publication-format="electronic"><day>11</day><month>04</month><year>2024</year></pub-date><volume>60</volume><issue>4</issue><fpage>94</fpage><lpage>103</lpage><history><date date-type="received" iso-8601-date="2025-02-26"><day>26</day><month>02</month><year>2025</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2024, Russian Academy of Sciences</copyright-statement><copyright-statement xml:lang="ru">Copyright ©; 2024, Российская академия наук</copyright-statement><copyright-year>2024</copyright-year><copyright-holder xml:lang="en">Russian Academy of Sciences</copyright-holder><copyright-holder xml:lang="ru">Российская академия наук</copyright-holder></permissions><self-uri xlink:href="https://transsyst.ru/0016-6758/article/view/666953">https://transsyst.ru/0016-6758/article/view/666953</self-uri><abstract xml:lang="en"><p>Coronary heart disease (CHD) is a common pathology, and its development is mediated by a large number of genetic factors, environmental factors and their combinations. In this regard, the objective of the study was a bioinformatic analysis of the involvement of susceptibility genes to CHD in the implementation of signaling and metabolic pathways. The list of susceptibility genes was compiled using GWAS, DisGeNET and GeneCards databases. Pathway enrichment analysis was performed using the ClueGO v2.5.9 Cytoscape v3.9.1 plugin. As a result of the study, it was established that these genes are involved in the implementation of various mechanisms of development of CHD, including disorders of lipid metabolism, changes in the activity of elements of the complement system, and endothelial function. Hereditary factors can influence changes in the processes of regulation of thrombus formation, vascular tone, the balance of pro- and antioxidant factors, endothelial permeability, water and sodium adsorption, as well as the processes of angiogenesis. In this case, the genes under study may be involved in the implementation of one or several signaling/metabolic pathways.</p></abstract><trans-abstract xml:lang="ru"><p>Ишемическая болезнь сердца (ИБС) является распространенной патологией, и ее развитие опосредуется большим числом генетических факторов, факторов внешней среды и их комбинаций. В связи с этим задачей исследования явился биоинформационный анализ вовлеченности генов предрасположенности к ИБС в реализацию сигнальных и метаболических путей. Список генов предрасположенности был составлен при помощи баз данных GWAS, DisGeNET и GeneCards. Анализ обогащения путей проводился с использованием плагина ClueGO v2.5.9 Cytoscape v3.9.1. В результате проведенного исследования установлено, что данные гены вовлечены в реализацию различных механизмов развития ИБС, включая нарушения липидного метаболизма, изменения активности элементов системы комплемента, функции эндотелия. Наследственные факторы могут оказывать влияние на процессы регуляции тромбообразования, тонус сосудов, баланс про- и антиокислительных факторов, проницаемость эндотелия, адсорбцию воды и натрия, а также процессы ангиогенеза. При этом исследуемые гены могут быть вовлечены в реализацию одного либо нескольких сигнальных/метаболических путей.</p></trans-abstract><kwd-group xml:lang="en"><kwd>CHD</kwd><kwd>susceptibility genes</kwd><kwd>pathway enrichment analysis</kwd><kwd>Cytoscape</kwd><kwd>ClueGO</kwd></kwd-group><kwd-group xml:lang="ru"><kwd>ИБС</kwd><kwd>гены предрасположенности</kwd><kwd>анализ обогащения путей</kwd><kwd>Cytoscape</kwd><kwd>ClueGO</kwd></kwd-group><funding-group/></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><mixed-citation>Khan M.A., Hashim M.J., Mustafa H. et al. Global epidemiology of ischemic heart disease: Results from the global burden of disease study // Cureus. 2020. V. 12. № 7. https://doi.org/10.7759/cureus.9349</mixed-citation></ref><ref id="B2"><label>2.</label><mixed-citation>Colditz G.A., Stampfer M.J., Willett W.C. et al. A prospective study of parental history of myocardial infarction and coronary heart disease in women // Am. J. Epidemiol. 1986. V. 123. P. 48–58. https://doi.org/10.1093/oxfordjournals.aje.a114223</mixed-citation></ref><ref id="B3"><label>3.</label><mixed-citation>Lewis D., Wang Q., Topol E.J. Ischaemic heart disease // Nat. Encyclopedia Life Sciences. 2002. V. 10. P. 508–515.</mixed-citation></ref><ref id="B4"><label>4.</label><mixed-citation>Shen G., Archacki S.R., Wang Q. The molecular genetics of coronary artery disease and myocardial infarction // Acute Coronary Syndrome. 2004. V. 6. P. 129–141. https://doi.org/10.1097/01.hco.0000160373.77190.f1</mixed-citation></ref><ref id="B5"><label>5.</label><mixed-citation>Slack J., Evans K.A. The increased risk of death from ischaemic heart disease in first degree relatives of 121 men and 96 women with ischaemic heart disease // J. Med. Genet. 1966. V. 2. P. 239–257. https://doi.org/10.1136/jmg.3.4.239</mixed-citation></ref><ref id="B6"><label>6.</label><mixed-citation>Wang Q., Pyeritz R.E. Molecular genetics of cardiovascular disease // Textbook of Cardiovascular Medicine. Edn 1. N. Y. Lippincott Williams &amp; Wilkins, 2000. P. 1–12.</mixed-citation></ref><ref id="B7"><label>7.</label><mixed-citation>Wang Q., Chen Q. Cardiovascular disease and congenital defects // Nat. Encyclopedia Life Sciences. 2000. V. 3. P. 646–657.</mixed-citation></ref><ref id="B8"><label>8.</label><mixed-citation>Wang Q., Chen Q. Cardiovascular disease and congenital heart defects // Nat. Encyclopedia Human Genome. 2003. V. 1. P. 396–411.</mixed-citation></ref><ref id="B9"><label>9.</label><mixed-citation>Wang Q. Molecular genetics of coronary artery disease // Curr. Opin. Cardiol. 2005. V. 20. № 3. P. 182–188. https://doi.org/10.1097/01.hco.0000160373.77190.f1</mixed-citation></ref><ref id="B10"><label>10.</label><mixed-citation>MacArthur J., Bowler E., Cerezo M. et al. The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog) // Nucl. Ac. Res. 2017. V. 45. P. D896–D901. https://doi.org/10.1093/nar/gkw1133</mixed-citation></ref><ref id="B11"><label>11.</label><mixed-citation>Pinero J., Bravo A., Rosinach N.Q. et al. DisGeNET: A comprehensive platform, integrating information on human disease-associated genes and variants // Nuc. Ac. Res. 2017. V. 45. P. D833–D839. https://doi.org/10.1093/nar/gkw943</mixed-citation></ref><ref id="B12"><label>12.</label><mixed-citation>Safran M., Dalah I., Alexander J. et al. GeneCards version 3: The human gene integrator // Database (Oxford). 2010. https://doi.org/10.1093/database/baq020</mixed-citation></ref><ref id="B13"><label>13.</label><mixed-citation>Bindea G., Mlecnik B., Hackl H. et al. ClueGO: A Cytoscape plug-into decipher functionally grouped gene ontology and pathway annotation networks // Bioinformatics. 2009. V. 25. № 8. P. 1091–1093. https://doi.org/10.1093/bioinformatics/btp101</mixed-citation></ref><ref id="B14"><label>14.</label><mixed-citation>Kanehisa M., Goto S., Kawashima S., Nakaya A. The KEGG databases at GenomeNet // Nucl. Ac. Res. 2002. V. 30. № 1. P. 42–46. https://doi.org/10.1093/nar/30.1.42</mixed-citation></ref><ref id="B15"><label>15.</label><mixed-citation>Fabregat A., Jupe S., Matthews L. et al. The reactome pathway knowledgebase // Nucl. Ac. Resh. 2018. V. 46. № D1. P. D649–D655. https://doi.org/10.1093/nar/gkx1132</mixed-citation></ref><ref id="B16"><label>16.</label><mixed-citation>Tang W., Hu J., Zhang H. et al. Kappa coefficient: A popular measure of rater agreement // Shanghai Archives of Psychiatry. 2015. V. 27. № 1. P. 62–67. https://doi.org/10.11919/j.issn.1002-0829.215010</mixed-citation></ref><ref id="B17"><label>17.</label><mixed-citation>Wilson P.W., DʹAgostino R.B., Levy D. et al. Prediction of coronary heart disease using risk factor categories // Circulation. 1998. V. 97. № 18. P. 1837–1847. https://doi.org/10.1161/01.cir.97.18.1837</mixed-citation></ref><ref id="B18"><label>18.</label><mixed-citation>Zhang X., Sessa W.C., Fernandez-Hernando C. Endothelial transcytosis of lipoproteins in atherosclerosis // Front. Cardiovasc. Med. 2018. V. 5. https://doi.org/10.3389/fcvm.2018.00130</mixed-citation></ref><ref id="B19"><label>19.</label><mixed-citation>Mehta D., Malik A.B. Signaling mechanisms regulating endothelial permeability // Physiol. Rev. 2006. V. 86. P. 279–367. https://doi.org/10.1152/physrev.00012.2005</mixed-citation></ref><ref id="B20"><label>20.</label><mixed-citation>Rahimi N. Defenders and challengers of endothelial barrier function // Front. Immunol. 2017. V. 8. https://doi.org/10.3389/fimmu.2017.01847</mixed-citation></ref><ref id="B21"><label>21.</label><mixed-citation>Fung K.Y.Y., Fairn G.D., Lee W.L. Transcellular vesicular transport in epithelial and endothelial cells: Challenges and opportunities // Traffic. 2018. V. 19. P. 5–18. https://doi.org/10.1111/tra.12533</mixed-citation></ref><ref id="B22"><label>22.</label><mixed-citation>Лапунова Л.Л. Иммунологические изменения при некоторых заболеваниях сердечно-сосудистой системы // Мед, новости. 1996. № 11. С. 3–8.</mixed-citation></ref><ref id="B23"><label>23.</label><mixed-citation>van Hinsbergh V.W. Endothelium-role in regulation of coagulation and inflammation // Semin. Immunopathol. 2012. V. 34. № 1. P. 93–106. https://doi.org/10.1007/s00281-011-0285-5</mixed-citation></ref><ref id="B24"><label>24.</label><mixed-citation>Rajendran P., Rengarajan T., Thangavel J. et al. The vascular endothelium and human diseases // Int. J. Biol. Sci. 2013. V. 9. P. 1057–1069. https://doi.org/10.7150/ijbs.7502.</mixed-citation></ref><ref id="B25"><label>25.</label><mixed-citation>Kirsch J., Schneider H., Pagel J.-I. et al. Endothelial dysfunction, and a prothrombotic, proinflammatory phenotype is caused by loss of mitochondrial thioredoxin reductase in endothelium // Arterioscler. Thromb. Vasc. Biol. 2016. V. 36. P. 1891–1899. https://doi.org/10.1161/ATVBAHA.116.307843</mixed-citation></ref><ref id="B26"><label>26.</label><mixed-citation>Lin J., He S., Sun X. et al. MicroRNA-181b inhibits thrombin-mediated endothelial activation and arterial thrombosis by targeting caspase recruitment domain family member 10 // FASEB J. 2016. V. 30. P. 3216–3226. https://doi.org/10.1096/fj.201500163R</mixed-citation></ref><ref id="B27"><label>27.</label><mixed-citation>Yau J.W., Singh K.K., Hou Y. et al. Endothelial-specific deletion of autophagy-related 7 (ATG7) attenuates arterial thrombosis in mice // J. Thorac. Cardiovasc. Surg. 2017. V. 154. P. 978–988. https://doi.org/10.1016/j.jtcvs.2017.02.058</mixed-citation></ref><ref id="B28"><label>28.</label><mixed-citation>Wu Q., Hu Y., Jiang M. et al. Effect of autophagy regulated by sirt1/foxo1 pathway on the release of factors promoting thrombosis from vascular endothelial cells // Int. J. Mol. Sci. 2019. V. 20. https://doi.org/10.3390/ijms20174132</mixed-citation></ref><ref id="B29"><label>29.</label><mixed-citation>Donegan R.K., Moore C.M., Hanna D.A., Reddi A.R. Handling heme: The mechanisms underlying the movement of heme within and between cells // Free Radic. Biol. Med. 2019. V. 133. P. 88–100. https://doi.org/10.1016/j.freeradbiomed.2018.08.005</mixed-citation></ref><ref id="B30"><label>30.</label><mixed-citation>Gouveia Z., Carlos A.R., Yuan X. et al. Characterization of plasma labile heme in hemolytic conditions // FEBS J. 2017. V. 284. № 19. P. 3278–3301. https://doi.org/10.1111/febs.14192</mixed-citation></ref><ref id="B31"><label>31.</label><mixed-citation>Sandoo A., van Zanten J.J., Metsios G.S. et al. The endothelium and its role in regulating vascular tone // Open Cardiovasc. Med. J. 2010. V. 4. P. 302–312. https://doi.org/10.2174/1874192401004010302</mixed-citation></ref><ref id="B32"><label>32.</label><mixed-citation>Heathcote H.R., Lee M.D., Zhang X. et al. Endothelial TRPV4 channels modulate vascular tone by Ca2+ -induced Ca2+ release at inositol 1,4,5-trisphosphate receptors // Br. J. Pharmacol. 2019. V. 176. P. 3297–3317. https://doi.org/10.1111/bph.14762</mixed-citation></ref><ref id="B33"><label>33.</label><mixed-citation>Gao W., Liu H., Yuan J. et al. Exosomes derived from mature dendritic cells increase endothelial inflammation and atherosclerosis via membrane TNF-alpha mediated NF-kappaB pathway // J. Cell. Mol. Med. 2016. V. 20. P. 2318–2327. https://doi.org/10.1111/jcmm.12923</mixed-citation></ref><ref id="B34"><label>34.</label><mixed-citation>Herrero-Fernandez B., Gomez-Bris R., Somovilla-Crespo B., Gonzalez-Granado J.M. Immunobiology of atherosclerosis: A complex net of interactions // Int. J. Mol. Sci. 2019. V. 20. https://doi.org/10.3390/ijms20215293</mixed-citation></ref><ref id="B35"><label>35.</label><mixed-citation>Marchio P., Guerra-Ojeda S., Vila J.M. et al. Targeting early atherosclerosis: A focus on oxidative stress and inflammation // Oxid. Med. Cell Longev. 2019. V. 2019. https://doi.org/10.1155/2019/8563845</mixed-citation></ref><ref id="B36"><label>36.</label><mixed-citation>Nafisa A., Gray S.G., Cao Y. et al. Endothelial function and dysfunction: Impact of metformin // Pharmacol. Ther. 2018. V. 192. P. 150–162. https://doi.org/10.1016/j.pharmthera.2018.07.007</mixed-citation></ref><ref id="B37"><label>37.</label><mixed-citation>Silva I.V.G., de Figueiredo R.C., Rios D.R.A. Effect of different classes of antihypertensive drugs on endothelial function and inflammation // Int. J. Mol. Sci. 2019. V. 20. https://doi.org/10.3390/ijms20143458</mixed-citation></ref><ref id="B38"><label>38.</label><mixed-citation>Incalza M.A., DʹOria R., Natalicchio A. Oxidative stress and reactive oxygen species in endothelial dysfunction associated with cardiovascular and metabolic diseases // Vascul. Pharmacol. 2018. V. 100. P. 1–19. https://doi.org/10.1016/j.vph.2017.05.005</mixed-citation></ref><ref id="B39"><label>39.</label><mixed-citation>Guagliardo N.A., Yao J., Hu C., Barrett P.Q. Mini review: Aldosterone biosynthesis: Electrically gated for our protection // Endocrinology. 2012. V. 153. № 8. P. 3579–3586. https://doi.org/10.1210/en.2012-1339</mixed-citation></ref><ref id="B40"><label>40.</label><mixed-citation>Palatini P., Ceolotto G., Ragazzo F. et al. CYP1A2 genotype modifies the association between coffee intake and the risk of hypertension // J. Hypertens. 2009. V. 27. № 8. P. 1594–1601. https://doi.org/10.1097/HJH.0b013e32832ba850</mixed-citation></ref><ref id="B41"><label>41.</label><mixed-citation>Li L., He M., Zhou L. et al. A solute carrier family 22 member 3 variant rs3088442 G→A associated with coronary heart disease inhibits lipopolysaccharide-induced inflammatory response // J. Biol. Chem. 2015. V. 290. № 9. P. 5328–5340. https://doi.org/10.1074/jbc.M114.584953</mixed-citation></ref><ref id="B42"><label>42.</label><mixed-citation>Abrahao K.P., Salinas A.G., Lovinger D.M. Alcohol and the brain: Neuronal molecular targets, synapses, and circuits // Neuron. 2017. V. 96. № 6. P. 1223–1238. https://doi.org/10.1016/j.neuron.2017.10.032</mixed-citation></ref><ref id="B43"><label>43.</label><mixed-citation>Pries A.R., Secomb T.W., Gaehtgens P. The endothelial surface layer // Pflug. Arch. 2000. V. 440. P. 653–666. https://doi.org/10.1007/s004240000307</mixed-citation></ref><ref id="B44"><label>44.</label><mixed-citation>Buonassisi V. Sulfated mucopolysaccharide synthesis and secretion in endothelial cell cultures // Exp. Cell Res. 1973. V. 76. P. 363–368. https://doi.org/10.1016/0014-4827(73)90388-1</mixed-citation></ref><ref id="B45"><label>45.</label><mixed-citation>Gerrity R.G., Richardson M., Somer J.B. et al. Endothelial cell morphology in areas of in vivo Evans blue uptake in the aorta of young pigs. II. Ultrastructure of the intima in areas of differing permeability to proteins // Am. J. Pathol. 1977. V. 89. P. 313–334.</mixed-citation></ref><ref id="B46"><label>46.</label><mixed-citation>Baldwin A.L., Winlove C.P. Effects of perfusate composition on binding of ruthenium red and gold colloid to glycocalyx of rabbit aortic endothelium // J. Histochem. Cytochem. 1984. V. 32. P. 259–266. https://doi.org/10.1177/32.3.6198357</mixed-citation></ref><ref id="B47"><label>47.</label><mixed-citation>Schnittler H.J. Structural and functional aspects of intercellula r junctions in vascular endothelium // Basic Res. Cardiol. 1998. V. 93. № 3. P. 30–39. https://doi.org/10.1007/s003950050205</mixed-citation></ref><ref id="B48"><label>48.</label><mixed-citation>Lampugnani M.G. Endothelial cell-to-cell junctions: adhesion and signaling in physiology and pathology // Cold Spring Harb. Perspect. Med. 2012. V. 2. https://doi.org/10.1101/cshperspect.a006528</mixed-citation></ref><ref id="B49"><label>49.</label><mixed-citation>Simionescu M., Simionescu N., Palade G.E. Segmental differentiations of cell junctions in the vascular endothelium. The microvasculature // J. Cell Biol. 1975. V. 67. P. 863–885. https://doi.org/10.1083/jcb.67.3.863</mixed-citation></ref><ref id="B50"><label>50.</label><mixed-citation>Dejana E., Corada M., Lampugnani M.G. Endothelial cell-to-cell junctions // FASEB J. 1995. V. 9. P. 910–918. https://doi.org/10.1096/fasebj.9.10.7615160</mixed-citation></ref><ref id="B51"><label>51.</label><mixed-citation>Simionescu M., Antohe F. Functional ultrastructure of the vascular endothelium: changes in various pathologies // The Vascular Endothelium I. Berlin; Heidelberg: Springer. 2006. P. 41–69. https://doi.org/10.1007/3-540-32967-6_2</mixed-citation></ref><ref id="B52"><label>52.</label><mixed-citation>Boettner B., Van Aelst L. Control of cell adhesion dynamics by Rap1 signaling // Curr. Opin. Cell Biol. 2009. V. 21. P. 684–693. https://doi.org/10.1016/j.ceb.2009.06.004</mixed-citation></ref><ref id="B53"><label>53.</label><mixed-citation>Shah N., Meira L.B., Elliott R.M. et al. DNA damage and repair in patients with coronary artery disease: Correlation with plaque morphology using optical coherence tomography (decode study) // Cardiovasc. Revasc. Med. 2019. V. 20. № 9. P. 812–818. https://doi.org/10.1016/j.carrev.2019.04.028</mixed-citation></ref><ref id="B54"><label>54.</label><mixed-citation>Melincovici C.S., Boşca A.B., Şuşman S. et al. Vascular endothelial growth factor (VEGF) – key factor in normal and pathological angiogenesis // Rom. J. Morphol. Embryol. 2018. V. 59. № 2. P. 455–467.</mixed-citation></ref><ref id="B55"><label>55.</label><mixed-citation>Adams J.C., Tucker R.P. The thrombospondin type 1 repeat (TSR) superfamily: Diverse proteins with related roles in neuronal development // Dev. Dyn. 2000. V. 218. № 2. P. 280–299. https://doi.org/10.1002/(SICI)1097-0177(200006) 218:2&lt;280::AID-DVDY4&gt;3.0.CO;2-0</mixed-citation></ref></ref-list></back></article>
