<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE root>
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="research-article" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Russian Journal of Genetics</journal-id><journal-title-group><journal-title xml:lang="en">Russian Journal of Genetics</journal-title><trans-title-group xml:lang="ru"><trans-title>Генетика</trans-title></trans-title-group></journal-title-group><issn publication-format="print">0016-6758</issn><issn publication-format="electronic">3034-5103</issn><publisher><publisher-name xml:lang="en">The Russian Academy of Sciences</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">666951</article-id><article-id pub-id-type="doi">10.31857/S0016675824040071</article-id><article-id pub-id-type="edn">crdrpp</article-id><article-categories><subj-group subj-group-type="toc-heading"><subject>ГЕНЕТИКА ЧЕЛОВЕКА</subject></subj-group><subj-group subj-group-type="article-type"><subject>Research Article</subject></subj-group></article-categories><title-group><article-title xml:lang="en">Toll-like receptor gene polymorphisms in a population-based study of HIV and tuberculosis patients from Eastern Europe and Central Asia</article-title><trans-title-group xml:lang="ru"><trans-title>Полиморфизм генов Толл-подобных рецепторов в выборке больных ВИЧ-инфекцией и туберкулезом из стран Восточной Европы и Центральной Азии</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Salamaikina</surname><given-names>S. А.</given-names></name><name xml:lang="ru"><surname>Саламайкина</surname><given-names>С. А.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio><p>национальный исследовательский университет</p></bio><email>salamaykina@cmd.su</email><xref ref-type="aff" rid="aff1"/><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Korchagin</surname><given-names>V. I.</given-names></name><name xml:lang="ru"><surname>Корчагин</surname><given-names>В. И.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>salamaykina@cmd.su</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Mironov</surname><given-names>К. О.</given-names></name><name xml:lang="ru"><surname>Миронов</surname><given-names>К. О.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>salamaykina@cmd.su</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Kulabukhova</surname><given-names>Е. I.</given-names></name><name xml:lang="ru"><surname>Кулабухова</surname><given-names>Е. И.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>salamaykina@cmd.su</email><xref ref-type="aff" rid="aff1"/><xref ref-type="aff" rid="aff3"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Zimina</surname><given-names>V. N.</given-names></name><name xml:lang="ru"><surname>Зимина</surname><given-names>В. Н.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>salamaykina@cmd.su</email><xref ref-type="aff" rid="aff4"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Kravtchenko</surname><given-names>А. V.</given-names></name><name xml:lang="ru"><surname>Кравченко</surname><given-names>А. В.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>salamaykina@cmd.su</email><xref ref-type="aff" rid="aff1"/></contrib></contrib-group><aff-alternatives id="aff1"><aff><institution xml:lang="en">Central Research Institute of Epidemiology Federal service for surveillance on consumer rights protection and human wellbeing</institution></aff><aff><institution xml:lang="ru">Центральный научно-исследовательский институт эпидемиологии Федеральной службы по надзору в сфере защиты прав потребителей и благополучия человека</institution></aff></aff-alternatives><aff-alternatives id="aff2"><aff><institution xml:lang="en">Moscow institute of physics and technology</institution></aff><aff><institution xml:lang="ru">Московский физико-технический институт</institution></aff></aff-alternatives><aff-alternatives id="aff3"><aff><institution xml:lang="en">Peoplesʹ Friendship University of Russia (RUDN University)</institution></aff><aff><institution xml:lang="ru">Российский университет дружбы народов</institution></aff></aff-alternatives><aff-alternatives id="aff4"><aff><institution xml:lang="en">Kemerovo state medical university of the ministry of health of the Russian Federation</institution></aff><aff><institution xml:lang="ru">Кемеровский государственный медицнский университет</institution></aff></aff-alternatives><pub-date date-type="pub" iso-8601-date="2024-04-11" publication-format="electronic"><day>11</day><month>04</month><year>2024</year></pub-date><volume>60</volume><issue>4</issue><fpage>84</fpage><lpage>93</lpage><history><date date-type="received" iso-8601-date="2025-02-26"><day>26</day><month>02</month><year>2025</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2024, Russian Academy of Sciences</copyright-statement><copyright-statement xml:lang="ru">Copyright ©; 2024, Российская академия наук</copyright-statement><copyright-year>2024</copyright-year><copyright-holder xml:lang="en">Russian Academy of Sciences</copyright-holder><copyright-holder xml:lang="ru">Российская академия наук</copyright-holder></permissions><self-uri xlink:href="https://transsyst.ru/0016-6758/article/view/666951">https://transsyst.ru/0016-6758/article/view/666951</self-uri><abstract xml:lang="en"><p>Genetic diversity of human populations is determined by polymorphic variants of immune response genes and can be linked to the variation in responses to infectious agents. This study compared allele and genotype frequencies of polymorphic variants of <italic>TLR1</italic>, <italic>TLR2</italic>, <italic>TLR4</italic>, <italic>TLR6</italic> and <italic>TLR8</italic> genes between samples from Eastern Europe and Central Asia. We included 680 unrelated individuals from Eastern Slavic (<italic>n</italic> = 308), Armenian (<italic>n</italic> = 137), Tajik (<italic>n</italic> = 138) and Kyrgyz (<italic>n</italic> = 97) samples of patients with confirmed diagnoses of HIV and tuberculosis. The international 1000 Genomes Project data - samples of Caucasians (EUR) and countries of eastern (EAS) and southern (SAS) Asia – were used for comparison. Despite the lack of genetic diversity and population differences in allele frequencies of the analyzed genes, the samples differed in a number of loci both from each other and from EAS, SAS samples.</p></abstract><trans-abstract xml:lang="ru"><p>Полиморфные варианты генов иммунного ответа могут быть ассоциированы с особенностями реакции организма на инфекционные агенты и вносят вклад в генетическое разнообразие популяций человка. В настоящем исследовании проведен сравнительный анализ частот аллелей и генотипов полиморфных вариантов генов Толл-подобных рецепторов <italic>TLR1</italic>, <italic>TLR2</italic>, <italic>TLR4</italic>, <italic>TLR6</italic> и <italic>TLR8</italic> в выборках пациентов с ВИЧ и туберкулезом, проживающих на территории стран Восточной Европы и Центральной Азии. В исследование включено 680 неродственных индивидов из восточнославянской (<italic>n</italic> = 308), армянской (<italic>n</italic> = 137), таджикской (<italic>n</italic> = 138) и киргизской (<italic>n</italic> = 97) выборок пациентов с установленными диагнозами ВИЧ и туберкулез. Для сравнения использованы данные международного проекта 1000 Genomes – выборки европеоидов (EUR) и представителей стран Восточной (EAS) и Южной (SAS) Азии. Обнаружено, что, несмотря на низкий уровень генетического разнообразия и межпопуляционных различий по частотам аллелей анализируемых генов, исследуемые выборки тем не менее различались по ряду локусов между собой и отличались как от популяций европеоидов, так и от жителей стран Восточной и Южной Азии.</p></trans-abstract><kwd-group xml:lang="en"><kwd>immune response genes</kwd><kwd>toll-like receptors</kwd><kwd>single nucleotide polymorphism</kwd><kwd>human populationsм HIV</kwd><kwd>tuberculosis</kwd></kwd-group><kwd-group xml:lang="ru"><kwd>гены иммунного ответа</kwd><kwd>Толл-подобные рецепторы</kwd><kwd>однонуклеотидный полиморфизм</kwd><kwd>популяции человека</kwd><kwd>ВИЧ</kwd><kwd>туберкулез</kwd></kwd-group><funding-group/></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><mixed-citation>Саламайкина С.А., Миронов К.О. Однонуклеотидные полиморфизмы генов толл-подобных рецепторов, ассоциированные с риском развития туберкулеза и другими заболеваниями нижних дыхательных путей // Эпидемиология и инфекционные болезни. Актуальные вопросы. 2023. Т. 4. С. 57–61.</mixed-citation></ref><ref id="B2"><label>2.</label><mixed-citation>Naderi M., Hashemi M., Mirshekari H. et al. Toll-like receptor 1 polymorphisms increased the risk of pulmonary tuberculosis in an iranian population sample // BES. 2016. V. 29. № 11. P. 825–828. https://doi.org/10.3967/bes2016.110</mixed-citation></ref><ref id="B3"><label>3.</label><mixed-citation>Thompson C.M., Holden T.D., Rona G. et al. Toll-like receptor 1 polymorphisms and associated outcomes in sepsis after traumatic injury: А candidate gene association study // Annals of Surgery. 2014. V. 259. № 1. P. 179–185. https://doi.org/10.1097/SLA.0b013e31828538e8</mixed-citation></ref><ref id="B4"><label>4.</label><mixed-citation>Schurz H., Daya M., Möller M. et al. TLR1, 2, 4, 6 and 9 variants associated with tuberculosis susceptibility: А systematic review and meta-analysis // PLoS One. 2015. V. 10. https://doi.org/10.1371/journal.pone.0139711</mixed-citation></ref><ref id="B5"><label>5.</label><mixed-citation>Gao J., Zhang A., Wang X. et al. Association between the TLR2 Arg753Gln polymorphism and the risk of sepsis: a meta-analysis // Critical Care. 2015. V. 19. № 1. P. 416. https://doi.org/10.1186/s13054-015-1130-3</mixed-citation></ref><ref id="B6"><label>6.</label><mixed-citation>Ferwerda B., Kibiki G., Netea M. et al. The Toll-like receptor 4 Asp299Gly variant and tuberculosis susceptibility in HIV-infected patients in Tanzania // AIDS. 2007. V. 21. № 10. P. 1375–1377. https://doi.org/10.1097/QAD.0b013e32814e6b2d</mixed-citation></ref><ref id="B7"><label>7.</label><mixed-citation>Pulido I., Leal M., Genebat M. et al. The TLR4 ASP299GLY polymorphism is a risk factor for active tuberculosis in Caucasian HIV-infected patients // Curr. HIV Res. 2010. V. 8, № 3. P. 253–258. https://doi.org/10.2174/157016210791111052</mixed-citation></ref><ref id="B8"><label>8.</label><mixed-citation>Wang C.-H., Eng H.-L., Lin K.-H. et al. Functional polymorphisms of TLR8 are associated with hepatitis C virus infection // Immunology. 2014. V. 141. № 4. P. 540–548. https://doi.org/10.1111/imm.12211</mixed-citation></ref><ref id="B9"><label>9.</label><mixed-citation>El-Bendary M., Neamatallah M., Elalfy H. et al. The association of single nucleotide polymorphisms of Toll-like receptor 3, Toll-like receptor 7 and Toll-like receptor 8 genes with the susceptibility to HCV infection // British J. Biomedical Science. 2018. V. 75. № 4. P. 175–181. https://doi.org/10.1080/09674845.2018.1492186</mixed-citation></ref><ref id="B10"><label>10.</label><mixed-citation>Davila S., Hibberd M., Hari Dass R. et al. Genetic association and expression studies indicate a role of Toll-like receptor 8 in pulmonary tuberculosis // PLoS Genet. 2008. V. 4. № 10. https://doi.org/10.1371/journal.pgen.1000218</mixed-citation></ref><ref id="B11"><label>11.</label><mixed-citation>Varzari A., Deyneko I., Vladei I. et al. Genetic variation in TLR pathway and the risk of pulmonary tuberculosis in a Moldavian population // Infection, Genetics and Evolution. 2019. V. 68. P. 84–90. https://doi.org/10.1016/j.meegid.2018.12.005</mixed-citation></ref><ref id="B12"><label>12.</label><mixed-citation>Dalgic N., Tekin D., Kayaalti Z. et al. Relationship between Toll-like receptor 8 gene polymorphisms and pediatric pulmonary tuberculosis // Disease Markers. 2011. V. 31. № 1. P. 33–38. https://doi.org/10.3233/DMA-2011-0800</mixed-citation></ref><ref id="B13"><label>13.</label><mixed-citation>Ugolini M., Gerhard J., Burkert S. et al. Recognition of microbial viability via TLR8 drives TFH cell differentiation and vaccine responses // Nat. Immunol. 2018. V. 19. № 4. P. 386–396. https://doi.org/10.1038/s41590-018-0068-4</mixed-citation></ref><ref id="B14"><label>14.</label><mixed-citation>Selvaraj P., Harishankar M., Singh B. et al. Toll-like receptor and TIRAP gene polymorphisms in pulmonary tuberculosis patients of South India // Tuberculosis. 2010. V. 90. № 5. P. 306–310. https://doi.org/10.1016/j.tube.2010.08.001</mixed-citation></ref><ref id="B15"><label>15.</label><mixed-citation>Harishankar M., Selvaraj P., Bethunaickan R. Influence of genetic polymorphism towards pulmonary tuberculosis susceptibility // Front. Med. 2018. V. 5. https://doi.org/10.3389/fmed.2018.00213</mixed-citation></ref><ref id="B16"><label>16.</label><mixed-citation>The 1000 Genomes Project Consortium et al. A global reference for human genetic variation // Nature. 2015. V. 526. № 7571. P. 68–74. https://doi.org/10.1038/nature15393</mixed-citation></ref><ref id="B17"><label>17.</label><mixed-citation>Machiela M.J., Chanock S.J. LDlink: A web-based application for exploring population-specific haplotype structure and linking correlated alleles of possible functional variants // Bioinformatics. 2015. V. 31. № 21. P. 3555–3557. https://doi.org/10.1093/bioinformatics/btv402</mixed-citation></ref><ref id="B18"><label>18.</label><mixed-citation>18. dbSNP Summary [электронный ресурс]. URL: https://www.ncbi.nlm.nih.gov/projects/SNP/snp_summary.cgi (accessed: 05.10.2023).</mixed-citation></ref><ref id="B19"><label>19.</label><mixed-citation>Salamaikina S., Korchagin V., Kulabukhova E. et al. Association of Toll-like receptor gene polymorphisms with tuberculosis in HIV-positive participants // Epigenomes. 2023. V. 7. № 3. https://doi.org/10.3390/epigenomes7030015</mixed-citation></ref><ref id="B20"><label>20.</label><mixed-citation>Graffelman J. Exploring diallelic genetic markers: the Hardy–Weinberg package // J. Stat. Soft. 2015. V. 64. № 3. https://doi.org/10.18637/jss.v064.i03</mixed-citation></ref><ref id="B21"><label>21.</label><mixed-citation>Kamvar Z.N., Tabima J.F., Grünwald N.J.Poppr : An R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction // Peer.J. 2014. V. 2. https://doi.org/10.3389/fgene.2015.00208</mixed-citation></ref><ref id="B22"><label>22.</label><mixed-citation>Jombart T. adegenet : A R package for the multivariate analysis of genetic markers // Bioinformatics. 2008. V. 24. № 11. P. 1403–1405. https://doi.org/10.1093/bioinformatics/btn129</mixed-citation></ref><ref id="B23"><label>23.</label><mixed-citation>Jombart T., Ahmed I.adegenet 1.3-1: New tools for the analysis of genome-wide SNP data // Bioinformatics. 2011. V. 27. № 21. P. 3070–3071. https://doi.org/10.1093/bioinformatics/btr521</mixed-citation></ref><ref id="B24"><label>24.</label><mixed-citation>Winter D.J. mmod: An R library for the calculation of population differentiation statistics // Mol. Ecol. Resources. 2012. V. 12. № 6. P. 1158–1160. https://doi.org/10.1111/j.1755-0998.2012.03174.x</mixed-citation></ref><ref id="B25"><label>25.</label><mixed-citation>Serrote C.M.L., Reiniger L., Silva K.B. et al. Determining the polymorphism information content of a molecular marker // Gene. 2020. V. 726. https://doi.org/10.1016/j.gene.2019.144175</mixed-citation></ref><ref id="B26"><label>26.</label><mixed-citation>Nei M. Molecular evolutionary genetics // Molecular Evolutionary Genetics. Columbia Univ. Press, 2019.</mixed-citation></ref><ref id="B27"><label>27.</label><mixed-citation>Nei M., Chesser R.K. Estimation of fixation indices and gene diversities // Ann. Human. Genet. 1983. V. 47. № 3. P. 253–259. https://doi.org/10.1111/j.1469-1809.1983.tb00993.x</mixed-citation></ref><ref id="B28"><label>28.</label><mixed-citation>Kushniarevich A., Sivitskaya L., Danilenko N. et al. Uniparental genetic heritage of Belarusians: encounter of rare Middle Eastern matrilineages with a Central European mitochondrial DNA pool // PLoS One. 2013. V. 8. № 6. https://doi.org/10.1371/journal.pone.0066499</mixed-citation></ref><ref id="B29"><label>29.</label><mixed-citation>Roewer L., Willuweit S., Krüger C. et al. Analysis of Y chromosome STR haplotypes in the European part of Russia reveals high diversities but non-significant genetic distances between populations // Int. J. Legal. Med. 2008. V. 122. № 3. P. 219–223. https://doi.org/10.1007/s00414-007-0222-2</mixed-citation></ref><ref id="B30"><label>30.</label><mixed-citation>Weale M.E., Yepiskoposyan L., Jager R. et al. Armenian Y chromosome haplotypes reveal strong regional structure within a single ethno-national group // Hum. Genet. 2001. V. 109. № 6. P. 659–674. https://doi.org/10.1007/s00439-001-0627-9</mixed-citation></ref><ref id="B31"><label>31.</label><mixed-citation>Yepiskoposyan L., Hovhannisyan A., Khachatryan Z. Genetic structure of the Armenian population // Arch. Immunol. Ther. Exp. 2016. V. 64. № 1. P. 113–116. https://doi.org/10.1007/s00005-016-0431-9</mixed-citation></ref><ref id="B32"><label>32.</label><mixed-citation>Heyer E., Balaresque P., Jobling M. et al. Genetic diversity and the emergence of ethnic groups in Central Asia // BMC Genetics. 2009. V. 10. № 1. https://doi.org/10.1186/1471-2156-10-49</mixed-citation></ref><ref id="B33"><label>33.</label><mixed-citation>Xing J., Watkins W., Shlien A. et al. Toward a more uniform sampling of human genetic diversity: A survey of worldwide populations by high-density genotyping // Genomics. 2010. V. 96. № 4. P. 199–210. https://doi.org/10.1016/j.ygeno.2010.07.004</mixed-citation></ref><ref id="B34"><label>34.</label><mixed-citation>Guarino-Vignon P., Marchi N., Bendezu-Sarmiento J. et al. Genetic continuity of Indo-Iranian speakers since the Iron Age in southern Central Asia // Sci. Rep. 2022. V. 12. № 1. P. 733. https://doi.org/10.1038/s41598-021-04144-4</mixed-citation></ref><ref id="B35"><label>35.</label><mixed-citation>Palstra F.P., Heyer E., Austerlitz F. Statistical inference on genetic data reveals the complex demographic history of human populations in Central Asia // Mol. Biol. and Evolution. 2015. V. 32. № 6. P. 1411–1424. https://doi.org/10.1093/molbev/msv030</mixed-citation></ref><ref id="B36"><label>36.</label><mixed-citation>Martínez-Cruz B., Vitalis R., Ségurel L. et al. In the heartland of Eurasia: The multilocus genetic landscape of Central Asian populations // Eur. J. Hum. Genet. 2011. V. 19. № 2. P. 216–223. https://doi.org/10.1038/ejhg.2010.153</mixed-citation></ref><ref id="B37"><label>37.</label><mixed-citation>Narasimhan V.M., Patterson N., Moorjani P. et al. The formation of human populations in South and Central Asia // Science. 2019. V. 365. № 6457. https://doi.org/10.1126/science.aat7487</mixed-citation></ref><ref id="B38"><label>38.</label><mixed-citation>Zhou Y., Zhang M. Associations between genetic polymorphisms of TLRs and susceptibility to tuberculosis: A meta-analysis // Innate Immun. 2020. V. 26. № 2. P. 75–83. https://doi.org/10.1177/1753425919862354</mixed-citation></ref><ref id="B39"><label>39.</label><mixed-citation>Кулабухова Е.И., Миронов К.О., Дунаева Е. А. и др. Ассоциация полиморфизмов в генах Toll-подобных рецепторов и маннозосвязывающего лектина с риском развития туберкулеза у пациентов с ВИЧ-инфекцией // ВИЧ-инфекция и иммуносупрессии. 2020. Т. 11. № 4. С. 61–69. https://doi.org/10.22328/2077-9828-2019-11-4-61-69</mixed-citation></ref><ref id="B40"><label>40.</label><mixed-citation>Martin A.R., Gignoux C., Walters R. et al. Human demographic history impacts genetic risk prediction across diverse populations // Am. J. Hum Genet. 2017. V. 100. № 4. P. 635–649. https://doi.org/10.1016/j.ajhg.2017.03.004</mixed-citation></ref><ref id="B41"><label>41.</label><mixed-citation>Peterson R.E., Kuchenbaecker K., Walters R. et al. Genome-wide association studies in ancestrally diverse populations: opportunities, methods, pitfalls, and recommendations // Cell. 2019. V. 179. № 3. P. 589–603. https://doi.org/10.1016/j.cell.2019.08.051</mixed-citation></ref></ref-list></back></article>
